YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73959812
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAACLPRER LRPLAGWLLL LSVGSVAAGR IEDQTEQFFR SGHTNNWAVL VCTSRFWFNY  60
   61 RHVANTLSVY RSVKRLGIPD SHIVLMLADD MACNPRNPKP ATVFSHKNME LNVYGDDVEV 120
  121 DYRSYEVTVE NFLRVLTGRI PSSTPRSKRL LSDDRSNILI YMTGHGGNGF LKFQDSEEIT 180
  181 NIELADAFEQ MWQKRRYNEL LFIIDTCQGA SMYERFYSPN IMALASSQVG EDSLSHQPDP 240
  241 AIGVHLMDRY TFYVLEFLEE INPASQTNMN DLFQVCPRSL CVSTPGHRTD LFQRDPKNVL 300
  301 ITDFFGSVRK VEITTDTISL QPDLEITESS YKKDRMDEEL MEPLKYAEQL PVAQIIHQKP 360
  361 KLKDWHPPGG FILGLWALII MVFFKTYGIK HMKFIF

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	364	0.99
Transmembrane Helix	365	389	0.83
Cytoplasmic	390	396	0.97