YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73959269
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.88
Transmembrane Helix	82	107	0.85
Non-Cytoplasmic	108	114	0.72
Transmembrane Helix	115	135	0.85
Cytoplasmic	136	154	0.77
Transmembrane Helix	155	175	0.66
Non-Cytoplasmic	176	180	0.47
Transmembrane Helix	181	201	0.87
Cytoplasmic	202	215	0.41
Transmembrane Helix	216	237	0.86
Non-Cytoplasmic	238	247	0.44
Transmembrane Helix	248	269	0.89
Cytoplasmic	270	279	0.44
Transmembrane Helix	280	304	0.84
Non-Cytoplasmic	305	314	0.43
Transmembrane Helix	315	336	0.56
Cytoplasmic	337	343	0.61
Transmembrane Helix	344	363	0.58
Non-Cytoplasmic	364	369	0.75
Transmembrane Helix	370	390	0.81
Cytoplasmic	391	416	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGHRSTRKR CGDSHPESTM GFGHISTPGC VLNKLFQLPT PPLSRHQLKR LEEHRYQSAG  60
   61 RSLLEPLMQG YWEWLVGRVP SWIAPNLITI IGLSINICTT VLLVFYCPTA TEQAPLWAYI 120
  121 ACACGLFIYQ SLDAIDGKQA RRTNSSSPLG ELFDHGCDSL STVFVVLGTC IAVQLGTNPD 180
  181 WMFFCCFAGT FMFYCAHWQT YVSGTLRFGI FDVTESQIII IICQLLTGTL GPWFWNFTIP 240
  241 VLNIQMKIFP ALCTVAGTIF SCTNYFRVIF TGGVGKNGST IAGTSVLSPF LHIGSVITLA 300
  301 AMIYKKSAVQ LFEKHPCLYI LTFGFVSAKI TNKLVVAHMT KSEMHLLDTA FIGPALLFLD 360
  361 QYFNSFIDEY IVLWIALVFS FFDLIRYCVS VCNQIASHLH IHVFRIKVST AHSNHH