YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73958783
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGDNRSTN LLAAETASLE EQLQGWGEVM LMADKVLRWE RAWFPPAIMG VVSLLFLTIY  60
   61 YLDPSVLSGV SCFVMFLCLA DYLVPILAPR IFGSNKWTTE QQQRFHEICS NLVKTRRRAV 120
  121 GWWKRLFTLK EEKPKMYFMT MIVSLAAVAW VGQQVHNLLL TYLIATMVRM NVLADALKSI 180
  181 NNAEKRGKRQ VLIRPCSKVI VRFLTVMMKH GYIGEFEIID DHRAGKIVVN LTGRLNKCGV 240
  241 ISPRFDVQLK DLEKWQNNLL PSRQFGFIVL TTSAGIMDHE EARRKHTGGK ILGFFF

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	61	0.95
Non-Cytoplasmic	62	66	0.79
Transmembrane Helix	67	88	0.89
Cytoplasmic	89	133	0.96
Transmembrane Helix	134	152	0.90
Non-Cytoplasmic	153	158	0.72
Transmembrane Helix	159	179	0.49
Cytoplasmic	180	296	0.53