YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73958706
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	103	0.94
Transmembrane Helix	104	123	0.94
Cytoplasmic	124	139	0.79
Transmembrane Helix	140	162	0.80
Non-Cytoplasmic	163	177	0.74
Transmembrane Helix	178	198	0.88
Cytoplasmic	199	210	0.88
Transmembrane Helix	211	231	0.86
Non-Cytoplasmic	232	251	0.81
Transmembrane Helix	252	276	0.88
Cytoplasmic	277	282	0.79
Transmembrane Helix	283	303	0.92
Non-Cytoplasmic	304	343	0.96
Transmembrane Helix	344	363	0.92
Cytoplasmic	364	382	0.88
Transmembrane Helix	383	404	0.87
Non-Cytoplasmic	405	450	0.96
Transmembrane Helix	451	475	0.86
Cytoplasmic	476	492	0.90
Transmembrane Helix	493	514	0.93
Non-Cytoplasmic	515	522	0.88
Transmembrane Helix	523	547	0.86
Cytoplasmic	548	554	0.89
Transmembrane Helix	555	576	0.90
Non-Cytoplasmic	577	595	0.92
Transmembrane Helix	596	618	0.93
Cytoplasmic	619	727	0.98
Transmembrane Helix	728	747	0.85
Non-Cytoplasmic	748	748	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEPAKEPDA PAPPVAMFLV FSSHRGVANY VTGSKEKVTE GPSQEVKPEP TPSVAVLEPG  60
   61 KSTVQGAVLE SVLRTMESSS SSPQTPQSDP LEAFPQRSLE PGDIAVLVLY FIFVLAVGLW 120
  121 STVKTKRDTV KGYFLAGADM VWWPVGASLF ASNVGSGHFV GLAGSGAATG ISVTAYELSG 180
  181 LFLVLMLAWI FLPIYIAGQV TTMPEYLRKR FGGNRIPIIL AVLYLFIYIF TKISVDMYAG 240
  241 AIFIQQSLHL DLYVAIVGLL AITALYTIAG GLAAVIYTDA LQTLIMLIGA LILMGYSFAA 300
  301 IGGMEGLKEK YFLALASNRS ENSSCGLPRE DAFHIFRDPL TSDLPWPGII FGMSIPSLWY 360
  361 WCTDQVIVQR SLAAKNMSHA KGGSLMAAYL KVLPLFIMVF PGMVSRVLFP DQVACADPET 420
  421 CLKVCSNPSG CSDIAYPKLV LELLPTGLRG LMMAVMVAAL MSSLTSIFNS ASTIFTMDLW 480
  481 NYIRPRASEK ELMIVGRAFV LLLVLVSIAW IPVVQASQGG QLFIYIQSIS SYLQPPVAVV 540
  541 FIMGCFWKRT NEKGAFSGLI LGLLLGLIRM VLDFVYVQPR CDQPDDRPSV VKDIHYLYFS 600
  601 MILSAVTLIT VSTVSWFTEP PSKEMVSRLT WFTRHDPIVQ KEQVPPATPL PLTISQNGTP 660
  661 EASVTNIQLE IVQENISQCH SCDTTPKRSK VVRAILWLCG MDSSGKEPPS KAEPVMVSLE 720
  721 ENPLVKTLLD INLIICISCS IFLWGYFA