YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73958612
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGWPVTIL PSFPAHTLPQ LSVLGGRQPG LVQALLQMEA VVLIPYMLGL LLLPLLAVVL  60
   61 CVRCRELPGS YDSTASDSLT PSSIVIKRPP TVVPWPSAPS YGPVTSYPPL SQPDLLPIPR 120
  121 SPQPPGGSHR MPSSRQDSDG ANSVASYENE EHLSCEDNDE DEEEEYHNEG YLEVLPDSTP 180
  181 ATGTAVPPAP VPSNPSLRDS AFSMESGEDY VNVPESKESA NASLDGSREY VNVSQELPSL 240
  241 AGTDPVDRED MSLELPEVTM GRAPKGEKAA QRPQATSVPK RVVWAAEATQ SALSPRHLLG 300
  301 LLALGLCGA

Type	Start	End	Confidence
Cytoplasmic	1	39	0.35
Transmembrane Helix	40	62	0.72
Non-Cytoplasmic	63	309	0.58