YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73957551
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAKITKTPT GSLQQQRPTR PGASTAPVPP RPGPMVQPSR SGSGVAPSRP GAAPSRPGTV  60
   61 APSRPGTATP SRPGTAAPSR PGASEQPENT GPRMQQDAAS RIPKGQEKSS IQQRAEGRAK 120
  121 VPLKFRDSFK RFFFSPKGIL KILRLGLILG ALICFIIAKA YEPYIAITVL EMCIVLFFIL 180
  181 IYMLTLHHLL VFLDWPLLDL INSIITAMFL LIVAILAMQE MERRHLFYVG GIQCLMAAMV 240
  241 CILDAMLATK TMREKIKRFL GIELDTNASL LLEPIPEKAQ GTKSFWTLFS KAPTPAPVKA 300
  301 DTPAPGKAPA KTGTPAPAKA PEKAPAKAGT PAPAKAASQA STKAPAKTGT PAPAKAPAKA 360
  361 PAKAATQAPT KAPAKTPTSD SRRTPTQVSS MVSSRPSSGP ASSVPSSRPS LRTPART

Type	Start	End	Confidence
Cytoplasmic	1	139	0.96
Transmembrane Helix	140	160	0.93
Non-Cytoplasmic	161	164	0.81
Transmembrane Helix	165	186	0.91
Cytoplasmic	187	196	0.72
Transmembrane Helix	197	218	0.92
Non-Cytoplasmic	219	225	0.84
Transmembrane Helix	226	248	0.93
Cytoplasmic	249	417	0.95