YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73956402
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNYKYDKAI APESKTGGSP ALNNNPRKGG SKRMLLICLD LFCLFMAGLP FLIIETSTIK  60
   61 PYHRGFYCND ESIKYPLKIG ETINDAVLCA VGIVIAILAI ITGEFYRIYY LKEKSRSTIQ 120
  121 NPYVAALYKQ VGCFLFGCAI SQSFTDIAKV SIGRLRPHFL NVCNPDFSQI NCSEGYIQNY 180
  181 KCRGDDSKVQ EARKSFFSGH ASFSMYTMLY LVLYLQARFT WRGARLLRPL LQFTLIMMAF 240
  241 YTGLSRVSDH KHHPSDVLAG FAQGALVACC IVFFVSDLFK TKTTLSLPPP AIRKEILSPV 300
  301 DIIDRNNHHN MV

Type	Start	End	Confidence
Cytoplasmic	1	34	0.98
Transmembrane Helix	35	54	0.95
Non-Cytoplasmic	55	85	0.93
Transmembrane Helix	86	108	0.90
Cytoplasmic	109	125	0.90
Transmembrane Helix	126	145	0.52
Non-Cytoplasmic	146	195	0.56
Transmembrane Helix	196	217	0.72
Cytoplasmic	218	225	0.63
Transmembrane Helix	226	245	0.88
Non-Cytoplasmic	246	256	0.64
Transmembrane Helix	257	279	0.87
Cytoplasmic	280	312	0.75