YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73956309, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVDDLQFE EFGDAATSPA ANPGATTIHI EGPSESPTHQ PGLPRGSGGE EDDELLGNDD  60
   61 SDKTELLAGQ KKSSPFWTFE YYQTFFDVDT YQVFDRIKGS LLPIPGKNFV RLYIRSNPDL 120
  121 YGPFWICATL VFAIAISGNL SNFLIHLGEK TYHYVPEFRK VSIAATIIYA YAWLVPLALW 180
  181 GFLMWRNSKV MNIVSYSFLE IVCVYGYSLF IYIPTAVLWV IPQKAVRWIL VMIALGISGS 240
  241 VLAMTFWPAV REDNRRIALA TIVTIVLLHT LLSVGCLAYF FDAPEMDHHL PATTAAPNQT 300
  301 AAAAK

Type	Start	End	Confidence
Cytoplasmic	1	120	0.98
Transmembrane Helix	121	143	0.88
Non-Cytoplasmic	144	162	0.87
Transmembrane Helix	163	184	0.93
Cytoplasmic	185	195	0.80
Transmembrane Helix	196	218	0.85
Non-Cytoplasmic	219	227	0.73
Transmembrane Helix	228	249	0.94
Cytoplasmic	250	257	0.88
Transmembrane Helix	258	281	0.93
Non-Cytoplasmic	282	305	0.96