YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73956258
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVAGPDC CGGLGNVDFR QADLCVMTWL LGYVDPSDPC FVAAILTIAF NPLFWNVVAR  60
   61 WEQKTRKLSK AFRSPYLACY SLGAAILLLN ILRSHCFTQA MLSQPKMESL DNPMAYRVGL 120
  121 ALLGVGSTFV LSSFFALGFT GTFLGDYFGI LKEARVTTFP FNILDNPMYW GSTANYLGWA 180
  181 VMHASPTGLL LTVVVALIYR VAILYEEPFT AQIYQQKASS SHKRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.58
Transmembrane Helix	39	59	0.79
Cytoplasmic	60	75	0.56
Transmembrane Helix	76	97	0.74
Non-Cytoplasmic	98	113	0.42
Transmembrane Helix	114	128	0.72
Cytoplasmic	129	129	0.00
Transmembrane Helix	130	144	0.75
Non-Cytoplasmic	145	178	0.57
Transmembrane Helix	179	203	0.82
Cytoplasmic	204	225	0.75