YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73956142
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	153	0.73
Transmembrane Helix	154	175	0.92
Non-Cytoplasmic	176	181	0.62
Transmembrane Helix	182	204	0.89
Cytoplasmic	205	221	0.66
Transmembrane Helix	222	243	0.92
Non-Cytoplasmic	244	260	0.67
Transmembrane Helix	261	283	0.80
Cytoplasmic	284	290	0.63
Transmembrane Helix	291	314	0.81
Non-Cytoplasmic	315	322	0.61
Transmembrane Helix	323	344	0.91
Cytoplasmic	345	363	0.78
Transmembrane Helix	364	385	0.84
Non-Cytoplasmic	386	404	0.71
Transmembrane Helix	405	429	0.78
Cytoplasmic	430	444	0.83
Transmembrane Helix	445	465	0.94
Non-Cytoplasmic	466	480	0.78
Transmembrane Helix	481	506	0.73
Cytoplasmic	507	515	0.83
Transmembrane Helix	516	538	0.88
Non-Cytoplasmic	539	543	0.81
Transmembrane Helix	544	566	0.91
Cytoplasmic	567	661	0.97
Transmembrane Helix	662	682	0.93
Non-Cytoplasmic	683	747	0.96
Transmembrane Helix	748	768	0.93
Cytoplasmic	769	775	0.83
Transmembrane Helix	776	798	0.77
Non-Cytoplasmic	799	832	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATADSRPAR PASAHNAEVV HEVRPRSPPG RRRALLDPAA TGQLVRRGPP GAEIAAGAVE  60
   61 LPAVRRLSPL LPQSARSMEG AVMLPQMLLH LESATKVLFG CALGVGGNPF LDHVSLRFAE 120
  121 RYCTAYVWQV VVVGCEVVGN HPKELSSFSV SSKFLAQLMV FLISFVSSVF CGHLGKLELD 180
  181 SVTLAIAIIN VTGVSVGFGL SSACDTLMSQ TYGSQNLKHV GVILQRGILV LLLCCFPCWA 240
  241 LFLNTETILL LFRQDPAVSK LTQDYVMVFI PALPATFLYA LQAKYLLNQG IVLPQILTGV 300
  301 AANLVNAVIN YLFIYQLYLG VMGSALANMI SQFTLALVLF HYIISGKLHE ATWGGWSLEC 360
  361 LQDWASFFNL AIPSMLMLCM EWWAYEIGSL LSGILGMVEL GAQSVVYELT VILYMIPSGF 420
  421 SMAASVRVGN ALGAGNIEQA KKSSAVALLV TGFFAVTFCV VMLGCKDLVG FIFTTDREII 480
  481 VLVAQVIPIS AVSHLFESLA CTSGGILRGT GNQKVGAIVN AIGYYVIGLP VGISLMFATK 540
  541 LGVIGLWSGI IICAITQSLC FLGFILRLNW KKACEEAQVH ANLRLNTTQD GTSAACQDPG 600
  601 HPVGPENRGG ISMQDVRRKV RAPVGQQVCQ PTHQPMHGEE HLCVQPTGTA TLTGSQLLLR 660
  661 RGLLLVGVFS VLLMGILVRV YIKIKWYPSL PETSKRICPF SSGGPGIRMG DGGWGCGGLI 720
  721 SGPTLQAEEC TPPPPPASAG NTFCNTPFLA QLMIFLIGVV SSIFCGHLGK VELDAVTLAV 780
  781 SVVNVTGISV GTGLASACDT LMSQLDPFLV VEGDSNSGSL EEKECGQGSR EA