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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|70727425, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.68
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKSNKRLD FLPNRLNKYS IRKFTVGTAS ILVGATLIFG AGHDVAKAAE DTKTEEGVTS  60
   61 NSDESAQSSS ETANTGVETT EQATAEQPTT EEKATEESTT EQPSTEEKAT EESTTEQPST 120
  121 EEKATEESTT EQPSTEEKAT EESTTEQPST EEKASKESTT EQPSTEEKAS KESTTEQPST 180
  181 EEKASKESTT EQPSTEEKAS KESTTEQPST EEKVTEESTT EQSSIEEKAS KESTTEQPST 240
  241 EEKVTEESTT EQSSTEEKAS KESTTEQPST EEKTSEENTT ERSTVIDKDS SQSVQNISQN 300
  301 LGVSNEETIS ALSDAGVNTS NASEVDAIAA LIQKDYQNNK NENPVATFSN TSSQATTNNN 360
  361 TRTRTLANKI RIAAAAVAED NSKIIDADAL ANGYIKSQTD ATNAANTLSG RAWVVDQGTP 420
  421 ATMSNGLTSV PEGTPVYMQW IDKDGVVSPI YRAHTNNSLS TSGGSQVGPG AYAFDLRQAY 480
  481 TDANGKEHKY SATSGQYYKL WIEDYQTKNG NTVTMLRQAG GFFPGSYVNS VTSNNIGQFP 540
  541 LIGTNMQRTG IYMGVKPTSD YMTTSKDQWI HDTQGPISNA AVNTKAKNTV SGQVWLETGT 600
  601 GVDLANSASG PNLSGNDKVA PGYTVVMSSL TSEGVQAYKA AVDSLPESER ADAAKALLSD 660
  661 HPEYISATVY GETDSDGRYT LRFPDGTLND KYMYGYVVNP NGEVQNAYSS FTSPQFRSPM 720
  721 ANSSFVPQSR PGQNLIVNPM WYNLNFALVP QNDVKIDITN YNNTTKPARP GDVAQIDLSG 780
  781 TQLSPLPTHI EWRDKNGNVV SKTDDITSFT DGEQKGQFTV PASAQNGDIY TVVLVTGGKD 840
  841 VGADSFVVGT PKDNNVYEPT TEGVDKQYGE PTTEDDVTGA VTIPDYPADK EQPTITVDDP 900
  901 TQLPDGNTPG TSNVDVTVTY PDGTTDHIEV PVTVGNQADN DAYEPKTEGV DKQYGEPTTE 960
  961 DDVTGAVTIP DYPADKEQPT ITVDDPTQLP DGNTPGTSNV DVTVTYPDGT TDHIEVPVTV1020
 1021 GNQADNDAYE PKTEEVTKDY GTPTTEDDVT GAVTIPDYPS EKGKPTITVD DPSKLPDGNT1080
 1081 PGTSNVDVTV TYPDGTQDHV TVPVTTNPEK DNNAYEPKTE EITKDYGTPT TEDDVTGAVT1140
 1141 IPDYPSEKGK PTITVDDPSK LPDGNTPGTS NVDVTVTYPD GTQDHVTVPV TTNPEKDNNA1200
 1201 YEPETTPVTK EHGTPTTEDD VTGAVTIPDY PSEKGKPTIT VDDPSKLPDG NTPGTSNVDV1260
 1261 TVTYPDGTQD HVTVPVTTNP EKDNNAYEPE TTPVTKEHGT PTTEDDVTGA VTIPNYPSEK1320
 1321 GKPTITVDDP SKLPDGNTPG TSNVDVTVTY PDGTQDHVIV PVTTNPEKDN NAYEPKTEEV1380
 1381 TKDYGTPTTE DDVTGAVTIP NYPSEKGKPT ITVDDPSKLP DGNTPGTSNV DVTVTYPDGT1440
 1441 QDHVTVPVTT NPEKDNNAYE PKTEEVTKDY GTPTTEDDVT GAVTIPDYPS EKGKPTITVD1500
 1501 DPSKLPDGNT PGTTEVDVTV TYPDGTEDHI KVPVTVGTDT VAPDAPTVDA PEVGADTVTG1560
 1561 TGSEPGNTIT VTFPDGTTGT GTVGEDGSWS VEVPGGTELN NGDKITAVET DDAGNVSDEG1620
 1621 SAIVVDDSDA DADSDSDSDS DSDSDSDSDS DSDSDSDSDS DSDSDSDSDS DSDSDSDSDS1680
 1681 DSDSDSDSDS DSDSDSDSDS DSDSDSDSDS DSDSDSDSDA DADSDADADS DADADSDADA1740
 1741 DADSDADSDA DADSDADADS DADADSDADA DADSDADADS DADADADSDA DADADSDADA1800
 1801 DKDHNDKADK PNNKELPDTG NDAQNNATLF GSLFAALGGL FLVGRRRKNK NNEEK

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