YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68446829, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTKVLAI AILISLTLIY IQPMALADED ATWNKIKDRG ELRVGLSADY APLEFEKTKN  60
   61 GKTEYAGVDI ELAKKIAKDN HLKLKIVNMQ FDSLLGALKT GKIDVIISGM TTTPERKKEV 120
  121 DFSEPYMETG NVMLIRKNNN DTYHKLSDFN NKKIGAQKGS EQEKIAQQEI ENAQISSLNR 180
  181 LPDAILALKS KKIDGLVIEK PVADAYAKQN KDLNIAHVSF NEEKKPTVIA LPKDSPILLE 240
  241 HLNHSIKDVK DKHLINKYMD IASEQMVNDG SFIQKYGTFF LKGLQNTIII SLIGVVCGAI 300
  301 IGSFIALAKL SKFKIISLPA TIYIEFLRGT PMLVQVFIVF FGTTALLGLD ISALICGTIA 360
  361 LVINSSAYIA EIIRAGINAV DKGQTEAAQC LGLNYSKTMI HIILPQAFKN ILPALGNEFV 420
  421 TLIKESSIIS TIGVGEIMFN AQVVQGISFD PFTPLIIAAC MYFVLTFLLS RLMSLIEGRL 480
  481 KASD

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	287	0.99
Transmembrane Helix	288	308	0.96
Cytoplasmic	309	325	0.80
Transmembrane Helix	326	349	0.75
Non-Cytoplasmic	350	350	0.41
Transmembrane Helix	351	370	0.72
Cytoplasmic	371	425	0.56
Transmembrane Helix	426	440	0.50
Non-Cytoplasmic	441	451	0.67
Transmembrane Helix	452	473	0.88
Cytoplasmic	474	484	0.89