YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70725707, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.98
Transmembrane Helix	5	25	0.94
Cytoplasmic	26	181	0.99
Transmembrane Helix	182	204	0.85
Non-Cytoplasmic	205	219	0.88
Transmembrane Helix	220	240	0.94
Cytoplasmic	241	247	0.89
Transmembrane Helix	248	269	0.92
Non-Cytoplasmic	270	276	0.82
Transmembrane Helix	277	298	0.92
Cytoplasmic	299	305	0.86
Transmembrane Helix	306	328	0.90
Non-Cytoplasmic	329	335	0.85
Transmembrane Helix	336	356	0.95
Cytoplasmic	357	368	0.81
Transmembrane Helix	369	387	0.94
Non-Cytoplasmic	388	394	0.82
Transmembrane Helix	395	415	0.92
Cytoplasmic	416	434	0.88
Transmembrane Helix	435	458	0.90
Non-Cytoplasmic	459	465	0.84
Transmembrane Helix	466	488	0.87
Cytoplasmic	489	495	0.81
Transmembrane Helix	496	514	0.93
Non-Cytoplasmic	515	530	0.83
Transmembrane Helix	531	554	0.86
Cytoplasmic	555	567	0.87
Transmembrane Helix	568	587	0.89
Non-Cytoplasmic	588	643	0.95
Transmembrane Helix	644	664	0.93
Cytoplasmic	665	684	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTFIVGYI VLAVILVGLV NVLVLKSRKK RKNQAKGQHV NEESKSQSNP SKFKISDLDR  60
   61 DKVSNRTQDS QRDDDKQRHM NSEDRHIEND KRKNHFENEQ DQQDHASEQI HPEQKQASHS 120
  121 LHYSDDATED DKQDDDVNNQ HLPKDSIYEP INPDSQEGRV NERIKKQKED FVFGEGITRN 180
  181 KILAAMLFGM FIAILNQTLL NVALPKINTE FNISASTGQW LMTGFMLVNG ILIPISAFLF 240
  241 NKYSYRKLFI IALLLFTIGS LVCALSNNFP MMMGGRVLQA IGAGVLMPLG SNVIVTIFPP 300
  301 EKRGVAMGTM GIAMILAPAI GPTLSGYIVQ NYHWNVMFYG MFFLGIAAMI FGYFWFRLYQ 360
  361 RTTNPRADYQ GIVYSTIGFG ALLYGFSEAG NKGWGSAEIV TMFIIGAIFI AAFVIRELTM 420
  421 RAPMLNLEVL KSSTFTLTTI INMVVMMSLF GGMILLPIYL QNLRGFSALD SGLLLLPGSL 480
  481 VMGILGPITG KLLDTIGLKP LALFGIAVMA YGTWELTKLN MDTPYLHIMS IYVIRSFGMA 540
  541 FVMMPLMTAA INALPPRLIS HGNAFLNTMR QLAGSIGTAI LVTVMTTQTT NHVGAFTDEL 600
  601 DKTNPVIQDH VRQMAAQYGG QSEAVQAILK YVNQLAYIEG INDAFWIATG LAVLAFILSL 660
  661 FLKGKKGADA EHERMMHAES NKFK