YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTG3C_STAHJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.91
Transmembrane Helix	15	36	0.91
Non-Cytoplasmic	37	55	0.80
Transmembrane Helix	56	71	0.55
Cytoplasmic	72	72	0.27
Transmembrane Helix	73	101	0.81
Non-Cytoplasmic	102	128	0.53
Transmembrane Helix	129	150	0.90
Cytoplasmic	151	169	0.56
Transmembrane Helix	170	192	0.90
Non-Cytoplasmic	193	198	0.54
Transmembrane Helix	199	216	0.62
Cytoplasmic	217	217	0.05
Transmembrane Helix	218	233	0.61
Non-Cytoplasmic	234	274	0.52
Transmembrane Helix	275	296	0.70
Cytoplasmic	297	302	0.70
Transmembrane Helix	303	321	0.85
Non-Cytoplasmic	322	327	0.54
Transmembrane Helix	328	350	0.79
Cytoplasmic	351	354	0.46
Transmembrane Helix	355	374	0.79
Non-Cytoplasmic	375	380	0.62
Transmembrane Helix	381	403	0.89
Cytoplasmic	404	675	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKLFGQLQ RIGKALMLPV AILPAAGLLL AIGTAFQGEA LQQYLPFIKN GVIQNIANMM  60
   61 TGAGGIIFDN LPIIFALGVA IGLAGGDGVA AIAAFVGFII MNKTMGAFLN VTPAQLEDPS 120
  121 KGFANVLGIP TLQTGVFGGI IIGALAAWCY NKFYNISLPS YLGFFAGKRF VPIMMATTSF 180
  181 ILAFPMAWIW PFIQNGLNAF STGLLDSNTG LAVFLFGFIK RLLIPFGLHH IFHAPFWFEF 240
  241 GSWKNAAGEI IRGDQRIFIE QIREGVHLTS GKFMQGEFPV MMFGLPAAAL AIYQTAKPEN 300
  301 KKVVGGLMLS AALTSFLTGI TEPLEFSFLF VAPLLFFIHA VLDGLSFLTL YLLNLHLGYT 360
  361 FSGGFIDFVL LGILPNKTPW WLVIPVGLVY AVIYYVVFRF LIVKFNFKTP GREDKQASVA 420
  421 NTSASKLPFD VLDAMGGKEN IKHLDACITR LRVEVNDKSK VDVEGLKALG ASGVLEVGNN 480
  481 MQAIFGPKSD QIKHDMARIM NGDITKPSET TVTEDTSDEP VQLEEVKETD IYAPGTGHII 540
  541 PLSEVPDKVF SEKMMGDGIG FVPEKGGIVA PFDGTVKTIF PTKHAIGLES DTGIEVLIHI 600
  601 GIDTVKLNGE GFESLVDVNE PVTQGQPLMK INLAYLKEHA PSVVTPVIIT NQGDKTLTFD 660
  661 DVDSVDPGKR IMTIK