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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: COPA_STAHJ
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKQNATLN ITGMTCAACS NRIEKRLNKM DNVKAQVNLT TEKATIEYDT NDYAINDFVT  60
   61 TVQKLGYDVV IDKAELDITG MTCAACSNRI EKVLNKAPGV KDATVNLTTE QAMVTYYPGQ 120
  121 TDLDTLIGRI RNLGYDAQPK QSEEDQATRK QQELKHKRNK LMISTILSLP LLMTMLVHLF 180
  181 NMHLPDILMN PWFQFILATP IQFIIGWQFY VGAYKNLRNG GFNMDVLVAL GTSAAYFYSI 240
  241 YEMIKWFSGA TNMPHLYFET SAVLITLILF GKYLEARAKS QTTNALSELL NLQAKEARLI 300
  301 DDNGMEKMVP LNQVNVDDIL LIKPGEKIPV DGQIIKGETA IDESMLTGES MPVDKHVDDV 360
  361 VIGSTMNTNG VITIMATKVG KDTALSNIIK VVEEAQSSKA PIQRLADIIS GYFVPIVIAI 420
  421 ALLTFLIWIT LVHPGQFEDA LVAAISVLVI ACPCALGLAT PTSIMVGTGR AAENGILFKG 480
  481 GEYVERTHQV DTVVFDKTGT LTHGKPEVTY FEGDKDTLTL VASAENNSEH PLATAIVNYA 540
  541 KQHKVNLVNV TNYQTLPGHG IQAIIDDSML FVGNQKLMLD HQINIQSIKQ KMKQMEAEGH 600
  601 TVMLIAYDGK LRGMIAVADT VKASAKEAIQ QLSSMNIRTV MLTGDNERTA KAIAKEVGID 660
  661 QVIAGVLPED KAHHITQLQE QKHNVAMVGD GINDAPALVK ADIGIAMGTG TEVAIEAADI 720
  721 TILGGDIQLV PKAIHASHKT IRNIKQNLFW AFGYNIAGIP IAAMGLLAPW IAGAAMALSS 780
  781 VSVVSNALRL KRMKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle