YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73954786
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.84
Transmembrane Helix	108	130	0.68
Non-Cytoplasmic	131	138	0.74
Transmembrane Helix	139	158	0.95
Cytoplasmic	159	172	0.85
Transmembrane Helix	173	195	0.88
Non-Cytoplasmic	196	213	0.81
Transmembrane Helix	214	239	0.84
Cytoplasmic	240	250	0.84
Transmembrane Helix	251	273	0.89
Non-Cytoplasmic	274	304	0.84
Transmembrane Helix	305	330	0.80
Cytoplasmic	331	343	0.74
Transmembrane Helix	344	364	0.91
Non-Cytoplasmic	365	371	0.74
Transmembrane Helix	372	394	0.88
Cytoplasmic	395	405	0.74
Transmembrane Helix	406	426	0.85
Non-Cytoplasmic	427	622	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRGARQRP KGVGGSGGDT VSAADKLREL LCSREASGAE PRTELSGNKA GQVWAPEGST  60
   61 AFKCLLSARL CAALLSNISD CDETFNYWEP THYLIYGKGF QTWEYSPVYA IRSYAYLLLH 120
  121 AWPAAFHARI LQTNKILVFY FLRCLLAFVS CICELYFYKA VCKKFGLHVS RMMLAFLVLS 180
  181 TGMFCSSSAF LPSSFCMYTT LVAMTGWYMD KTSVAVLGVA AGAILGWPFS AALGLPIAFD 240
  241 LLVMKHRWKS FFHWSLVALI LFLVPVVVID SYYYGKLVVA PLNIVLYNVF TPHGPDLYGT 300
  301 EPWYFYLING FLNFNVAFAL ALLVLPLTSL MEYLLQRFHV QNLGHPYWLT LAPMYIWFLI 360
  361 FFIQPHKEER FLFPVYPLIC LCGAVALSAL QKCYHFVFQR YRLEHYTVTS NWLASGMLFL 420
  421 FGLLSFSRSV ALFKGYHGPL DLYPEFYRIA TDPTIHTVPE GRPVNVCVGK EWYRFPSSFL 480
  481 LPDNWQLQFI TSEFRGQLPK PFAEGPLATR IVPTDMNDQN LEEPSRYIDI SKCHYLVDLD 540
  541 TMGETPREPK YSSNREEWIS LAYRPFLDAS RSSKLLRAFY VPFLSDQYTV YANYTILKPR 600
  601 KAKQIRKKSG DRRRAELPYR KN