YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73954204
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.99
Transmembrane Helix	109	131	0.89
Non-Cytoplasmic	132	142	0.75
Transmembrane Helix	143	172	0.67
Cytoplasmic	173	218	0.95
Transmembrane Helix	219	239	0.91
Non-Cytoplasmic	240	248	0.71
Transmembrane Helix	249	269	0.86
Cytoplasmic	270	277	0.68
Transmembrane Helix	278	297	0.49
Non-Cytoplasmic	298	302	0.45
Transmembrane Helix	303	321	0.53
Cytoplasmic	322	335	0.73
Transmembrane Helix	336	353	0.61
Non-Cytoplasmic	354	380	0.70
Transmembrane Helix	381	403	0.88
Cytoplasmic	404	421	0.70
Transmembrane Helix	422	444	0.77
Non-Cytoplasmic	445	457	0.56
Transmembrane Helix	458	481	0.85
Cytoplasmic	482	515	0.62
Transmembrane Helix	516	547	0.81
Non-Cytoplasmic	548	742	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLESKQQHD LSLKNSVEGN DQHSPLSNMH PELGKQSSTD FKQFEANDQC TLYRRIHMEP  60
   61 REKSSTNFKQ FVIRKLQKSC QCSPAKAKNM IFDFLPVLRW LPKYDLKKNI LGDVMSGLIV 120
  121 GILLVPQSIA YSLLAGQEPI YGLYTSFFAS IIYFLLGTSR HISVGIFGIL CLMIGEVVDR 180
  181 ELHKAGYDTA DNAPSDLGLV LNGSTLLNQT SDRICDRSCY AIAVGSTVTF MAGVYQVAMG 240
  241 FFQVGFVSVY LSDALLSGFV TGASFTILTS QAKYLLGLSL PRSNGVGSLI TTWIHIFKNI 300
  301 HKTNICDLIT SLLCLLVLLP TKELNEHFKS KLKAPIPTEL IVVVAATLAS HFGKLNEKYN 360
  361 TSIAGSIPTG FMPPTAPDWN LIPSLAVDAI AISIIGFAIT VSLSEMFAKK HGYSVKANQE 420
  421 MYAIGFCNII PSFFHCFTTS AALAKTLVKE STGCQTQLSG VITALVLLLV LLVIAPLFYS 480
  481 LQKSVLGVIT IVNLRGALRK FKDLPKMWKV SRMDTVIWFV TMLSSALIST EIGLLIGVCF 540
  541 SMFCVILRTQ KPKTSLLGLV EESEIFESMS AYKNLQTKPG IKIFRFVAPL YYINKECFKS 600
  601 ALYKKTLNPV LVKAAQKKAA KRKITKETVI LSGVQDEVSV QLSHDPLELQ TIVIDCSAIQ 660
  661 FLDTAGIHTL KEVRRDYEAI GIQVLLAQCN PSVRDSLARG EYCKKEEENL LFYSVYEAMA 720
  721 FAEESQNQKG VCIPNGLSLS SD