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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73953998
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTQRCVCAR EKTCPVLKAN GFSAEDAEGA DCTTEDTHKR RQLVVSPAWV LVISRKDMWL  60
   61 LLALLGVLVE VPGAPALSLE ASEEIELEPC LAPSPEQQEQ ELTVALGQAV RLCCGRAERG 120
  121 GHWYKEGSRL PPAGRVRGWR GRLEIASFLP EDAGCYLCLA RGSMLVLHNV TLVVDDSLTS 180
  181 SNGNEDPKAH RVSRNGHIYS QQAPYWTHPQ RMEKKLHAVP AGNTVKFRCP AAGNPMPTIR 240
  241 WLKDGQDFHG EHRIGGIRLR HQHWSLVMES VVPSDRGTYT CLVENSMGSI RYSYLLDVLE 300
  301 RSPHRPILQA GLPANTTAVA GSDVELLCKV YSDAQPHIQW LKHIVINGSS FGADGFPYVQ 360
  361 VLKTADINSS EVEVLYLRNV SAEDAGEYTC LAGNSIGLSY QSAWLTVLPE EDLTWTAAAS 420
  421 EARYTDIILY VSGSLALVVL LLLAGLYRGQ VLISRQPRQP ATVQKLSRFP LARQFSLESG 480
  481 SSAKSSSSLV RGVRLSSSGP PLLSGLVSLD LPLDPLWEFP RDRLVLGKPL GEGCFGQVVR 540
  541 AEAFGMDPTQ PDQASTVAVK MLKDNASDKD LADLVSEMEV MKLIGRHKNI INLLGVCTQE 600
  601 GPLYVIVECA AKGNLREFLR ARRPPGPDLS PDGLRSSEGP LSFPALVSCA YQVARGMQYL 660
  661 ESRKCIHRDL AARNVLVTED NVMKIADFGL ARGVHHIDYY KKTSNGRLPV KWMAPEALFD 720
  721 RVYTHQSDVW SFGILLWEIF TLGGSPYPGI PVEELFSLLR EGHRMDRPPN CPPELYGLMR 780
  781 ECWHAAPSQR PTFKQLVEAL DKVLLAVSEE YLDLRLTFGP YSSAGGDASS TCSSNDSVFC 840
  841 HDLLPLGPSS FSFPGAQT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle