YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73953906
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELPAGAPPL LMFTHLRSDF PPALHSDEPP FGARCPGARL RGHRSVARQV ARLPAQHRRP  60
   61 GPGTAHGSHA SVSPTAAGAR AAAWAPFPTV DVPDHAHYIL GTVILLVGLT GMLGNLMVIY 120
  121 TFCRTRGLRT PSNMFIINLA VSDFFMSFTQ APVFFASSLH KRWLFGEAGC EFYAFCGALF 180
  181 GITSMITLTA IALDRYLVIT HPLAAVGVVS KRRAALVLLG VWLYALAWSL PPFFGWSAYV 240
  241 PEGLLTSCSW DYMSFTPSVR AYTMLLFCFV FFLPLLVIVY CYVFIFRAIR ETGQACEGGA 300
  301 RSPRQRQRLQ REWKMAKMEL LVILLFVLSW APYSAVALTA FAGYSHVLTP YMNSVPAVIA 360
  361 KASAIHNPII YAITHPKYRM AIAQHLPCLG VLLGVSGQRT GPYASYRSTH RSTLSSQASD 420
  421 LSWISGRRRQ ASLGSESEVG WMDTEAAAVW GAAQPAGGRF LCTQGLEDAE AKAPLRPRGQ 480
  481 AVETPGKVIG PGPCPSLDDP GPGAGLPGRL CPEQLEVQPG PGPSWENAAP LGGSAGSKDG 540
  541 QMPSSEPPPG SPPHPWVEGR D

Type	Start	End	Confidence
Cytoplasmic	1	64	0.89
Transmembrane Helix	65	84	0.84
Non-Cytoplasmic	85	97	0.82
Transmembrane Helix	98	122	0.88
Cytoplasmic	123	133	0.89
Transmembrane Helix	134	156	0.88
Non-Cytoplasmic	157	171	0.90
Transmembrane Helix	172	193	0.92
Cytoplasmic	194	213	0.87
Transmembrane Helix	214	235	0.89
Non-Cytoplasmic	236	260	0.92
Transmembrane Helix	261	284	0.93
Cytoplasmic	285	319	0.95
Transmembrane Helix	320	342	0.91
Non-Cytoplasmic	343	380	0.58
Transmembrane Helix	381	401	0.47
Cytoplasmic	402	561	0.59