YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73952882
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNKDEAER CISIALKAIQ SNQPDRALRF LEKAQRLYPT PRVRALIESL NQKPQSASDR  60
   61 PSPTDTTHRK AGGTDAPSAN GEAGGGESTK GYTAEQVAAV KRVKQCKDYY EILGVSRGAS 120
  121 DEDLKKAYRK LALKFHPDKN HAPGATEAFK AIGTAYAVLS NPEKRKQYDQ FGDDKSQAAR 180
  181 HGHGHGDFHR GFEADISPED LFNMFFGGGF PSSNVHVYSN GRMRYTYQQR QDRRENQGDG 240
  241 GLGVFVQLMP ILILILVSAL SQLMVSSPPY SLSPRPSVGH VHRRITDHLN VVYYVADSFS 300
  301 KEYTGSSLKT VERNVEDDYI ANLRNNCWKE KQQSECVGRL VLLCTSHLPV RSGTPPCFPG 360
  361 EGLLYRARYF GDTDMYHKAQ RMGTPSCSRL SEVQASLHG

Type	Start	End	Confidence
Cytoplasmic	1	239	0.67
Transmembrane Helix	240	265	0.76
Non-Cytoplasmic	266	399	0.85