YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73952528
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTGGRSGLR PGKGNPEGVA AGKGNAEGVA AAPTAASAPC QYRCIECNQE AKELYRDYNH  60
   61 GVLKITICKS CQKPVDKYIE YDPVIILINA ILCKAQAYRH ILFNTKINMH GKLCIFCLLC 120
  121 EAYLRWWQLQ DSNQNTDPND FIRYAKEWDF YRMFAIASLE QTAFFIGIFT FLWIERPMTA 180
  181 KKKPNFTLLL KALLLSSYGK LLLIPAVIWE HDYTPLCLRL IKVFVLTSNF QAIRVTLNIS 240
  241 RKLSFLAILG GLLMESTMVY LFQRMEWDMG SDCAIYKSQD F

Type	Start	End	Confidence
Cytoplasmic	1	108	0.92
Transmembrane Helix	109	127	0.83
Non-Cytoplasmic	128	152	0.88
Transmembrane Helix	153	174	0.91
Cytoplasmic	175	186	0.90
Transmembrane Helix	187	209	0.68
Non-Cytoplasmic	210	215	0.66
Transmembrane Helix	216	233	0.46
Cytoplasmic	234	242	0.58
Transmembrane Helix	243	262	0.89
Non-Cytoplasmic	263	281	0.68