YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73951980
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIRGWTISR EGCPAHWRTC ALISGHHLLD ARSIHPVRAA GPTAQKGSGS AEVPRKGHPE  60
   61 GLHPEGLHPE GPPPRGASTP RGLHPEGLHP EGLHPEGPAP RGPPPRGPPP RGACTPGACT 120
  121 PRACTPRAST PRASTPRGLH PEGLHPEGLH PEGLHPEGLH PEGLHPEGPA PRGPPPRGPP 180
  181 PRGPAPRGPP PRGPPPRGPA PRGPPPRGPP PRGPPPRGAC TPGACTPRAS TPRASTPRAY 240
  241 SLSQGHPETT EEAGPSSGRG RSRPRTALPR ARHGCALGLG LRGAGGGAAA TGAVRPRPSP 300
  301 PLPSALGGPR SRSSPGGAQV LASLAMSAAV RQRFDRFLQE KNCMTDLLAI LEARSGVNRR 360
  361 YIALGAVGLL ALYLVFGYGA SLLCNLIGFG YPAYVSIKAI ESPNKEDDTQ WLTYWVVYGV 420
  421 FSIAEFFSDL FLSWVPFYYM LKCGFLLWCM APSPSNGAEL LYRRVIQPVF LKHESQVDTM 480
  481 VNDFKDKAKE TVDTITKEAK KAAVTLLGDE KKST

Type	Start	End	Confidence
Cytoplasmic	1	272	0.81
Transmembrane Helix	273	294	0.59
Non-Cytoplasmic	295	314	0.66
Transmembrane Helix	315	330	0.62
Cytoplasmic	331	360	0.84
Transmembrane Helix	361	384	0.85
Non-Cytoplasmic	385	416	0.79
Transmembrane Helix	417	441	0.72
Cytoplasmic	442	514	0.85