YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73951817
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVGDAAAP GEGGGGGADG RGEAEQPGGG GGGGHGPSPA PQLTETLGFY ESDRRRERRR  60
   61 SRAELSLLRF LSAELTRGYF LEHNEAKYTE RRERVYTCMR IPRELEKLMV FGIFLCLDAF 120
  121 LYVFTLLPLR VFLALFRLFT LPCYGLRDRR LLQPAQVCDI LKGVILVICY FMMHYVDYSM 180
  181 MYHLIRGQSV IKLYIIYNML EVADRLFSSF GQDILDALYW TATEPKERKR AHIGVIPHFF 240
  241 MAVLYVFLHA ILIMVQATTL NVAFNSHNKS LLTIMMSNNF VEIKGSVFKK FEKNNLFQMS 300
  301 NSDIKERFTN YVLLLIVCLR NMEQFSWNPD HLWVLFPDVC MVIASETAVD IVKHAFITKF 360
  361 NDITADVYSE YRASLAFDLV SSRQKNAYTD YSDSVARRMG FIPLPLAVLL IRVVTSSIKV 420
  421 QGILSYACVV LFYFGLISLK VLNSIVLLGK SCQYVKEAKM EEKLFNPPPA SAPGKPPNKS 480
  481 QNKCKPSQGI WICFSTEENL SASVTSQPVH PKESVVPFLV ASSSDQFLTT PDGDEKDITQ 540
  541 ESSELKHRSS KKDLLEVDRF TICGNRID

Type	Start	End	Confidence
Cytoplasmic	1	107	0.89
Transmembrane Helix	108	132	0.84
Non-Cytoplasmic	133	157	0.66
Transmembrane Helix	158	178	0.76
Cytoplasmic	179	234	0.65
Transmembrane Helix	235	257	0.82
Non-Cytoplasmic	258	333	0.58
Transmembrane Helix	334	349	0.22
Cytoplasmic	350	398	0.56
Transmembrane Helix	399	415	0.50
Non-Cytoplasmic	416	421	0.58
Transmembrane Helix	422	442	0.67
Cytoplasmic	443	568	0.54