YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73951178
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAVPLRT LRRLCRVLLF LSQFYILSGG EQSQPLAQSI KDPGPTRTFT VVPRAAESTD  60
   61 IPPYVMKCPS NGLCSRLPAD CVECKTNFSC VYGKPVTFDC TVKPSVTCVD QDFKSQKNFI 120
  121 INMTCRFCWQ LPETDYECSN STSCMTVSCP RQRYTANCTV RDHIHCLGNR TFPKMLYCNW 180
  181 TGGYKWSTAL ALSITLGGFG ADRFYLGQWR EGLGKLFSFG GLGIWTLIDV LLIGVGYVGP 240
  241 ADGSLYI

Type	Start	End	Confidence
Signal Peptide	1	33	0.61
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	181	0.80
Transmembrane Helix	182	206	0.71
Cytoplasmic	207	215	0.71
Transmembrane Helix	216	238	0.86
Non-Cytoplasmic	239	247	0.75