YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73949214
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	224	0.98
Transmembrane Helix	225	244	0.82
Cytoplasmic	245	253	0.67
Transmembrane Helix	254	275	0.83
Non-Cytoplasmic	276	280	0.64
Transmembrane Helix	281	300	0.74
Cytoplasmic	301	334	0.82
Transmembrane Helix	335	366	0.71
Non-Cytoplasmic	367	383	0.50
Transmembrane Helix	384	407	0.85
Cytoplasmic	408	425	0.57
Transmembrane Helix	426	450	0.85
Non-Cytoplasmic	451	487	0.56
Transmembrane Helix	488	510	0.82
Cytoplasmic	511	575	0.52
Transmembrane Helix	576	596	0.89
Non-Cytoplasmic	597	603	0.72
Transmembrane Helix	604	624	0.94
Cytoplasmic	625	633	0.70
Transmembrane Helix	634	652	0.90
Non-Cytoplasmic	653	668	0.84
Transmembrane Helix	669	689	0.78
Cytoplasmic	690	775	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSLPLTLL LLGAWAIPGG SEDRAPLTAT APQLDDEEKY SAHMPAHLRC DACRAVAYQM  60
   61 WQHLAKAEAK LHTPDSGGRQ WELSESVYID VLDKSCSQSW QGYGVREVNQ VKRLTGPGLS 120
  121 KGPEPSISVM ITGGPWPTRL SMTCFHYLGE FGEDQIYEAH QQGQGALEAL LCGGLQGACS 180
  181 EEHESVGSAG TSTRDPTMSL PTEPKFDMLY KIEDVPPWYL CILLGFQHYL TCFSGTIAVP 240
  241 FLLAEALCVG RDQYMVSQLI GTIFTCVGIT TLIQTTLGIR LPLFQASAFA FLVPAKAILA 300
  301 LERWKCPPEE EIYGNWSLPL NTSHIWHPRI REVQGAIMVS SMVEVVIGLM GLPGALLSYI 360
  361 GPLTVTPTVS LIGLSVFQAA GDRAGSHWGI SACSILLIVL FSQYLRNLTF LLPVYRWGKG 420
  421 LTLFRVQIFK MFPIVLAIMS VWLLCYILTL TNVLPSDPTA YGFQARTDAR GDIMTIAPWI 480
  481 RIPYPCQWGL PTVTAAAVLG MFSATLAGII ESIGDYYACA RLAGAPPPPV HAINRGIFTE 540
  541 GICCIIAGLL GTGNGSTSSS PNIGVLGITK VGSRRVVQYG AAIMLVLGTI GKFTALFASL 600
  601 PDPILGGMFC TLFGMITAVG LSNLQFVDMN SSRNLFVLGF SMFFGLTLPN YLESNPGAIN 660
  661 TGIPEVDQIL TVLLTTEMFV GGCLAFILDN TVPGSLEERG LIQWKAGAHA NSEMSTSLKS 720
  721 YDFPIGMSIV KRTAFLKYIP ICPIFKGFSS RSKAQLPVPE DPPENIQTGS ACTKV