YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73949146
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	106	0.99
Transmembrane Helix	107	129	0.94
Non-Cytoplasmic	130	149	0.93
Transmembrane Helix	150	172	0.86
Cytoplasmic	173	189	0.87
Transmembrane Helix	190	210	0.90
Non-Cytoplasmic	211	217	0.80
Transmembrane Helix	218	240	0.93
Cytoplasmic	241	247	0.90
Transmembrane Helix	248	268	0.91
Non-Cytoplasmic	269	316	0.62
Transmembrane Helix	317	338	0.88
Cytoplasmic	339	357	0.54
Transmembrane Helix	358	379	0.80
Non-Cytoplasmic	380	434	0.66
Transmembrane Helix	435	455	0.85
Cytoplasmic	456	489	0.88
Transmembrane Helix	490	509	0.83
Non-Cytoplasmic	510	513	0.54
Transmembrane Helix	514	533	0.79
Cytoplasmic	534	551	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEPSGGVGV LKKTCGDVEA ESQPQMLDFI IGEILQHKNR QAADEKHGLH VNSPNTDDRK  60
   61 TPRNPGGWSG LRVRCHVVKF LEVIKPFCAV LPEIQKPERK IQFREKVLWT AITLFIFLVC 120
  121 CQIPLFGIMS SDSADPFYWM RVILASNRGT LMELGISPIV TSGLIMQLLA GAKIIEVGDT 180
  181 PKDRALFNGA QKLFGMIITI GQAIVYVMTG MYGDPAEMGA GICLLIIIQL FVAGLIVLLL 240
  241 DELLQKGYGL GSGISLFIAT NICETIVWKA FSPTTINTGR GTEFEGAVIA LFHLLATRTD 300
  301 KVRALREAFY RQNLPNLMNL IATVFVFAVV IYFQGFRVDL PIKSARYRGQ YSSYPIKLFY 360
  361 TSNIPIILQS ALVSNLYVIS QMLSVRFSGN FLVNLLGQWA DVSGGGPARS YPVGGLCYYL 420
  421 SPPESMGAIF EDPVHVVVYI IFMLGSCAFF SKTWIEVSGS SAKDVAKQLK EQQMVMRGHR 480
  481 DTSMVHELNR YIPTAAAFGG LCIGALSVLA DFLGAIGSGT GILLAVTIIY QYFEIFVKEQ 540
  541 AEVGGMGALF F