YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73947188
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVQQRCILN SPWMPMSISA EDLEPASNWV GARSRDWHAP GQLPCSAAPL QCQPPSGPWC  60
   61 SPPERRKEWK LTQRGLAACP SPRSCRVQGY RATAGPYRRR EEPWLPRPLV AVLPAHEGRF 120
  121 GVEVGAHDAR GARSGKAAGS WRERRSGPER GGSAGRTMES RPEEYELNGD LRPGSPGSPE 180
  181 ASPPRWGRNR PINVNHYANK KSAAESMLDI ALLMANASQL KAVIEQGPSF TFFVPLVVLI 240
  241 TISLALQIGV GVLLIFLVRY DLNNPAKHAK LDFLNNLATG LIFIIVVVNI FITAFGVQKP 300
  301 VMDVAPRQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	233	0.73
Transmembrane Helix	234	258	0.90
Cytoplasmic	259	272	0.77
Transmembrane Helix	273	297	0.86
Non-Cytoplasmic	298	308	0.79