YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73946218
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVGLLKSQ FLCHLVFCYV FIASGLIINT IQLFTLLLWP INKQLFRKIN CRLSYCVSSQ  60
   61 LVMLLEWWSG TECVIHTDPQ AYPKYGKENA IVVLNHKFEI DFLCGWSLAE RFGVLGGSKV 120
  121 LAKKELAYVP IIGWMWYFTE MVFCTRKWEQ DRKTVSKSLL HLRDYPEKYF FLIHCEGTRF 180
  181 TEKKHQISMQ VAQAKGLPSL KYHLLPRTKG FAITVRSLRN VVSAVYDCTL NFRNNENPTL 240
  241 LGVLNGKKYH ADLYVRRIPL EEVPEDEDEC SAWLHKLYQE KDAFQEEYYR TGTFPETPMV 300
  301 PPRRPWTLIN WLFWASLLLY PFFRFLINMI SSGSSLTLAS FVLVFFVASM GVRWMIGVTE 360
  361 IDKGSAYGNI DSKQKRSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.63
Transmembrane Helix	15	39	0.85
Cytoplasmic	40	306	0.75
Transmembrane Helix	307	327	0.90
Non-Cytoplasmic	328	334	0.67
Transmembrane Helix	335	356	0.91
Cytoplasmic	357	378	0.83