YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73946172
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATCLQCLS RGECCPYLAV KITPAIPVVG GILFFFVMGT LLRTSFSDPG VLPRATPDEA  60
   61 ADLERQIDIA NGTSSGGYRP PPRTKEVIIN GQTVKLKYCF TCKIFRPPRA SHCSLCDNCV 120
  121 ERFDHHCPWV GNCVGKRNYR FFYMFILSLS FLTVFIFAFV ITHVILRSQQ TGFLNALKDS 180
  181 PASVLEAVVC FFSVWSIVGL SGFHTYLISS NQTTNEDIKG SWSNKRGKEN YNPYSYGNIF 240
  241 TNCCVALCGP ISPSLIDRRG YIQPDTPQPA TPSNGIAAYG ATQSQSDMCD QDQCIQSTKF 300
  301 VLQAAATPLL QSEPSLTSDE LHLPGKPGLG TPCASLTLGQ PTPPSSMPNL TAEAALTDIL 360
  361 PLKEEHVGHQ FLTPEEAPSP PRLLAGSPLA HSRTMHVLGL ASQDSLHEDS VRGLVKLSSV 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	19	0.64
Transmembrane Helix	20	42	0.81
Non-Cytoplasmic	43	140	0.64
Transmembrane Helix	141	166	0.87
Cytoplasmic	167	183	0.61
Transmembrane Helix	184	206	0.81
Non-Cytoplasmic	207	420	0.74