YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58701069
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	31	0.86
Non-Cytoplasmic	32	45	0.87
Transmembrane Helix	46	66	0.89
Cytoplasmic	67	74	0.91
Transmembrane Helix	75	96	0.93
Non-Cytoplasmic	97	103	0.75
Transmembrane Helix	104	125	0.90
Cytoplasmic	126	133	0.83
Transmembrane Helix	134	156	0.89
Non-Cytoplasmic	157	162	0.79
Transmembrane Helix	163	183	0.93
Cytoplasmic	184	194	0.83
Transmembrane Helix	195	215	0.92
Non-Cytoplasmic	216	223	0.79
Transmembrane Helix	224	244	0.95
Cytoplasmic	245	264	0.91
Transmembrane Helix	265	288	0.87
Non-Cytoplasmic	289	295	0.90
Transmembrane Helix	296	317	0.93
Cytoplasmic	318	325	0.82
Transmembrane Helix	326	347	0.94
Non-Cytoplasmic	348	354	0.80
Transmembrane Helix	355	378	0.90
Cytoplasmic	379	585	0.63
Transmembrane Helix	586	606	0.90
Non-Cytoplasmic	607	614	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKATKIISF IGLTIAMFMG TLDSTIVNIA LPKIMTHFNA SLTDTSWVAT IYMLALAVFM  60
   61 ITGSKIADRY GRKKIMLLGL ALFGGFSAAC MLATSLPELI AFRFFQGLGG AIITPIVLPM 120
  121 GIEIFGKAHM SKMASVVGAV TALAAAGGPP IGGVIIEYAS WRWVFGINVP LTIVAFLIVA 180
  181 MGVRESYDES LAGRIDLPGT ILLTLGLGGL TFGLLEGRQY GWQSGIILGT LIGGVLAIGL 240
  241 FIFIESKVKH PLLELDLFRE KTLTASSLVY FLTGFALVGP TLILNYFLQD VLNDTALHAA 300
  301 LIIIPVSLTI MVAMPLGTKL FDQVGAVPVT LIGLLVMAAS LLLLSFITTT TPKAVIITFL 360
  361 VIHGVGFGFS SVSLVASVKH LPKNKSGIGS GIVNAARQIG TCLGIAILVT VLDNNVNTAK 420
  421 QHIHQDAIQI VDRQQLSPKV KKVAHQQLNS LFSTTGSAKL TTKNKQTNLR RALKQAAKSQ 480
  481 VDLPQPQKGT DLYQVYQAQK KLALATDNLK ADSQRLALTL TKLENQNTAI SKLSVASQKI 540
  541 NLGNQKISQG QKKLLVGLKQ LAQKEALTTA LRKIKHTKDR QISQAFSHTY LVGAVIVLIL 600
  601 SPIALLTDRK PLKS