YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI8_PIG
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGTWFLCRG FTTLAGLLLL PFGSLAASQI EDQAEQFFRS GHTNNWAVLV CTSRFWFNYR  60
   61 HVANTLSVYR SVKRLGIPDS HIVLMLADDM ACNPRNPKPA TVYSHKNMEL NVYGDDVEVD 120
  121 YRSYVVTVEN FLRVLTGRIP PSTPRSKRLL SDDRSNILIY MTGHGGNGFL KFQDSEEITN 180
  181 IELADAFEQM WQKRRYNELL FIIDTCQGAS MYERFYSPNI MALASSQVGE DSLSHQPDPA 240
  241 IGVHLMDRYT FYVLEFLEEI NPASQTNMND LFQVCPKSLC VSTPGHRTDP FQRDPKHVLI 300
  301 TDFFGSVRKV EITTETISLQ PDSGIMKSSH EKAGMDEELM EPLKYAEQLP VAQIIHQKPK 360
  361 LKDWHPPGGF ILGLWALIIM VFFKTYGIKH MKFIF

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	363	0.99
Transmembrane Helix	364	388	0.83
Cytoplasmic	389	395	0.97