YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73697719
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSHIGSWI LVLFVAMWSD VGLCKKRPKP GGGWNTGGSR YPGQGSPGGN RYPPQGGGGW  60
   61 GQPHGGGWGQ PHGGGWGQPH GGGWGQPHGG GGWGQGGTHS QWNKPSKPKT NMKHVAGAAA 120
  121 AGAVVGGLSG YMLGSAMSRP LIHFGNDYED RYYRENMYRY PNQVYYRPVD QYNNQNTFVH 180
  181 DCVNITVKQH TVTTTTKGEN FTETDIKMME RVVEQMCITQ YQRESQAYYQ RGASVILFSS 240
  241 PPVILLISFL IFLIVG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.33
Transmembrane Helix	6	24	0.36
Cytoplasmic	25	113	0.46
Transmembrane Helix	114	135	0.75
Non-Cytoplasmic	136	231	0.54
Transmembrane Helix	232	255	0.88
Cytoplasmic	256	256	0.53