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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|77993344, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRLLLISV LLGLSRAQQD GNECTKASAQ SCGECIQAGE KCGWCTDEGF LKQGEQKSTR  60
   61 CDEIEALEKK GCSKASIENP RGKITIVKNQ PVTNRTKNGA KLKPDQITQI QPQQLSLNLR 120
  121 SGEAQKFTLK FKRAEDYPID LYYLMDLSYS MKDDLENVKN LGTDLMKEMQ KITSDFRIGF 180
  181 GSFVEKTVMP YISTTPAKLL NPCTSDQNCT SPFSYKNVLS LTDDGSQFNS LVSRQQISGN 240
  241 LDSPEGGFDA IMQVAVCGNQ IGWRNVTRLL VFSTDAGFHF AGDGKLGGIV LPNDGKCHLQ 300
  301 DNIYTMSHYY DYPSIAHLVQ KLSENNIQTI FAVTEEFQPV YQELKNLIPK SAVGTLTSDS 360
  361 NNVIKLIIDA YNSLSSEVIL ENSKLPEGVS ISYVSHCKNG VSGTGDTGRK CSNISIGDEV 420
  421 AFEVAITAKG CPLNGKSETM KIKLLGFTEE VEVVLNFICE CECHKDGIKN SPVCHFGNGT 480
  481 LECGACRCNE GRIGRVCECS KDEVRTEDLD ANCRMDNGTD ICSNNGDCVC GTCECKKRDN 540
  541 PEERYSGKFC ECDNFNCDRS NNKLCGGHGR CDCRKCICDA NYTGSACDCS LDTSTCLASN 600
  601 KQICNGRGNC ECGACKCTDT KFQGPTCEIC PTCPGVCTEH KDCVQCRAFG TGDKKDTCEE 660
  661 QCSYFTMKVV KKKEDLPQPN DQPIINHCKE RDANDCWFFF TYATRNDSSV MVHVAEELEC 720
  721 PSGPDIIPIV AGVVAGIVLI GLALLLIWKL LMIIHDRREF AKFEKEKMNA KWDAGENPIY 780
  781 KSAVTTVVNP KYEGK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle