YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COQ2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.90
Transmembrane Helix	84	101	0.92
Non-Cytoplasmic	102	108	0.68
Transmembrane Helix	109	130	0.84
Cytoplasmic	131	148	0.85
Transmembrane Helix	149	170	0.86
Non-Cytoplasmic	171	176	0.65
Transmembrane Helix	177	197	0.87
Cytoplasmic	198	202	0.80
Transmembrane Helix	203	224	0.77
Non-Cytoplasmic	225	230	0.67
Transmembrane Helix	231	251	0.72
Cytoplasmic	252	277	0.84
Transmembrane Helix	278	296	0.89
Non-Cytoplasmic	297	302	0.62
Transmembrane Helix	303	321	0.61
Cytoplasmic	322	332	0.66
Transmembrane Helix	333	353	0.44
Non-Cytoplasmic	354	374	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLGGAGLV RGLRVVSPAW LRGPGGLPLA LARTTGTSGA RDRRAPASGT QRGRALSLSA  60
   61 AAVVNSAPRP LQPYLRLMRL DKPIGTWLLY LPCTWSIGLA ADPGCFPDWY MLSLFGTGAI 120
  121 LMRGAGCTIN DMWDRDFDKK VERTANRPIA AGDISAFQSF VFLGAQLTLA LGVLLHLNYY 180
  181 SIAMGAASLL LVVTYPLMKR VTFWPQLALG LTFNWGALLG WSAVKGSCDP AVCLPLYFSG 240
  241 VMWTLIYDTI YAHQDKKDDA LIGLKSTALL FRENTKQWLS GFGVAMVGAL SLVGASSGQT 300
  301 LPYYAAVAAV GAHLAHQIYT VDIHRAEDCW EKFTSNRTVG LLLFLGIVLG NLYKDKPDET 360
  361 KGVDAVGEES ERTS