YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74209040
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTSATILQV NKVMSILFYV IFLAYLRGIQ GNSMDQRSLP EDSLNSLIIK LIQADILKNK  60
   61 LSKQMVDVKE NYQSTLPKAE APREPEQGEA TRSEFQPMIA TDTELLRQQR RYNSPRVLLS 120
  121 DSTPLEPPPL YLMEDYVGNP VVANRTSPRR KRYAEHKSHR GEYSVCDSES LWVTDKSSAI 180
  181 DIRGHQVTVL GEIKTGNSPV KQYFYETRCK EARPVKNGCR GIDDKHWNSQ CKTSQTYVRA 240
  241 LTSENNKLVG WRWIRIDTSC VCALSRKIGR T

Type	Start	End	Confidence
Cytoplasmic	1	9	0.58
Transmembrane Helix	10	29	0.68
Non-Cytoplasmic	30	271	0.91