YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PXDN_MOUSE
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVRPTRRCL LALLLCFAWW AMAVVASKQG AGCPSRCLCF RTTVRCMHLL LEAVPAVAPQ  60
   61 TSILDLRFNR IREIQPGAFR RLRSLNTLLL NNNQIKKIPN GAFEDLENLK YLYLYKNEIQ 120
  121 SIDRQAFKGL ASLEQLYLHF NQIETLDPES FQHLPKLERL FLHNNRITHL VPGTFSQLES 180
  181 MKRLRLDSNA LHCDCEILWL ADLLKTYAQS GNAQAAATCE YPRRIQGRSV ATITPEELNC 240
  241 ERPRITSEPQ DADVTSGNTV YFTCRAEGNP KPEIIWLRNN NELSMKTDSR LNLLDDGTLM 300
  301 IQNTQEADEG VYQCMAKNVA GEAKTQEVTL RYLGSPARPT FVIQPQNTEV LVGESVTLEC 360
  361 SATGHPLPQI TWTRGDRTPL PIDPRVNITP SGGLYIQNVA QSDSGEYTCF ASNSVDSIHA 420
  421 TAFIIVQALP QFTVTPQSRV VIEGQTVDFQ CAAKGHPQPV IAWTKGGSQL SVDRRHLVLS 480
  481 SGTLRISGVA LHDQGQYECQ AVNIIGSQKV VAHLTVQPRV TPVFASIPSD MTVEVGTNVQ 540
  541 LPCSSQGEQE PAITWNKDGV QVTESGKFHI SPEGFLTIND VGTADAGRYE CVARNTIGYA 600
  601 SVSMVLSVNV PDVSRNGDPY VATSIVEAIA TVDRAINSTR THLFDSRPRS PNDLLALFRY 660
  661 PRDPYTVGQA RAGEIFERTL QLIQEHVQHG LMVDLNGTSY HYNDLVSPQY LSLIANLSGC 720
  721 TAHRRVNNCS DMCFHQKYRT HDGTCNNLQH PMWGASLTAF ERLLKAVYEN GFNTPRGINS 780
  781 QRQYNGHVLP MPRLVSTTLI GTEVITPDEQ FTHMLMQWGQ FLDHDLDSTV VALSQARFSD 840
  841 GQHCSSVCSN DPPCFSVMIP PNDPRVRSGA RCMFFVRSSP VCGSGMTSLL MNSVYPREQI 900
  901 NQLTSYIDAS NVYGSTDHEA RSIRDLASHR GLLRQGIVQR SGKPLLPFAT GPPTECMRDE 960
  961 NESPIPCFLA GDHRANEQLG LTSMHTLWFR EHNRIAAELL KLNPHWDGDT VYHETRKIVG1020
 1021 AEIQHITYRH WLPKILGEVG MKMLGEYRGY DPSVNAGIFN AFATAAFRFG HTLINPLLYR1080
 1081 LDENFEPIPQ GHVPLHKAFF SPFRIVNEGG IDPLLRGLFG VAGKMRIPSQ LLNTELTERL1140
 1141 FSMAHTVALD LAAINIQRGR DHGIPPYHDY RVYCNLSAAY TFEDLKNEIK SPVIREKLQR1200
 1201 LYGSTLNIDL FPALMVEDLV PGSRLGPTLM CLLSTQFRRL RDGDRLWYEN PGVFSPAQLT1260
 1261 QLKQTSLARI LCDNSDNITR VQQDVFRVAE FPHGYSSCED IPRVDLRVWQ DCCEDCRTRG1320
 1321 QFNAFSYHFR GRRSLEFSYE DDKPTKRARW RKALSVKHGK HLSNATSATH EHLEGPATND1380
 1381 LKEFVLEMQK IITDLRKQIN SLESRLSTTE CVDDSGESHG GNTKWKKDPC TVCECKNGQI1440
 1441 TCFVEACQPA ACPQPVKVEG ACCPVCLKNT AEEKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle