YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74184210
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTENRSRAD LALPNPQESS SAPDIELLEA SPAKAAPPKQ TWRTFLKKEL EFLGATQILV  60
   61 GLICLCFGTI VCSVLYVSDF DEEVLLLYKL GYPFWGAVLF VLSGFLSIIS ERKNTLYLNV 120
  121 TEDDGCFVAS FTTELVLMML FLTILAFCSA VLFTIYRIGQ ELESKKVPDD RLYEELNVYS 180
  181 PIYSELEDKG ETSSPVDS

Type	Start	End	Confidence
Cytoplasmic	1	52	0.72
Transmembrane Helix	53	77	0.88
Non-Cytoplasmic	78	89	0.61
Transmembrane Helix	90	109	0.90
Cytoplasmic	110	134	0.60
Transmembrane Helix	135	156	0.89
Non-Cytoplasmic	157	198	0.66