YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACMSD_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIDIHTHIL PKEWPDLEKR FGYGGWVQLQ QQGKGEAKMI KDGKLFRVIQ QNCWDPEVRI  60
   61 REMNQKGVTV QALSTVPVMF SYWAKPKDTL ELCQFLNNDL AATVARYPRR FVGLGTLPMQ 120
  121 APELAVEEME RCVKALGFPG IQIGSHINTW DLNDPELFPI YAAAERLNCS LFVHPWDMQM 180
  181 DGRMAKYWLP WLVGMPSETT MAICSMIMGG VFEKFPKLKV CFAHGGGAFP FTIGRIAHGF 240
  241 NMRPDLCAQD NPSDPRKYLG SFYTDSLVHD PLSLKLLTDV IGKDKVMLGT DYPFPLGEQE 300
  301 PGKLIESMAE FDEETKDKLT AGNALAFLGL ERKLFE

Type	Start	End	Confidence
Cytoplasmic	1	187	0.54
Transmembrane Helix	188	209	0.53
Non-Cytoplasmic	210	336	0.63