YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115928814, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.99
Transmembrane Helix	68	89	0.85
Non-Cytoplasmic	90	109	0.76
Transmembrane Helix	110	129	0.95
Cytoplasmic	130	137	0.88
Transmembrane Helix	138	156	0.96
Non-Cytoplasmic	157	162	0.84
Transmembrane Helix	163	185	0.92
Cytoplasmic	186	196	0.86
Transmembrane Helix	197	218	0.89
Non-Cytoplasmic	219	226	0.71
Transmembrane Helix	227	246	0.94
Cytoplasmic	247	307	0.97
Transmembrane Helix	308	330	0.83
Non-Cytoplasmic	331	348	0.86
Transmembrane Helix	349	371	0.94
Cytoplasmic	372	378	0.91
Transmembrane Helix	379	402	0.92
Non-Cytoplasmic	403	484	0.96
Transmembrane Helix	485	505	0.90
Cytoplasmic	506	524	0.78
Transmembrane Helix	525	545	0.88
Non-Cytoplasmic	546	553	0.75
Transmembrane Helix	554	573	0.96
Cytoplasmic	574	624	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFQQETSH LSDEYHHQYN NMSQAESSGE SNLQHPDGNS RRKVSHEMQK PGPEPPAAAA  60
   61 APPPLRPLVK VLACFAAIGG FLFGYDTGVV SGAMILLKKE FGLNTIWQEM IVSVTIGAAA 120
  121 LSALFGGIFN EKLGRRKVIL IASTVFTAGA LMMGLTPNKE LLLAGRLVVG IGVGLASMTV 180
  181 PMYIAEVAPV HARGRLVTLN NLFITGGQFV ASVVDGAFSY WPWGWRAMLG LAGVPSAIQL 240
  241 IGFIFLPESP RWLIDHGQLE KAKKVLIRTS GVEHWEYQYQ QIVQDAENTK RDYGDGSIFV 300
  301 RIFRTPPVLR ALFVGCGLQM FQQLAGINTI MYYSATIIRM SGVKDDSTVI WLSAVVAFVN 360
  361 FIFTLAGVYL VEKVGRRVLT LSSFTGVAAS VLFLAVAFLL IAESSPDIDV HSTDKCSIYS 420
  421 TCDACILTDD CGFCFQTLNK TIYNGTCLVA DILHGNQSLN GPCSQTHLLK HESEWAYDYC 480
  481 PSPYAFLSFI GLILYLIFFA PGMGPMPWTI NSEIYPQWAR STGNAVASTV NWSFNLLIAM 540
  541 TFLSLTELIT RQGAFFLYFG ICVVGIIFIA LFLPETKGTR LEDIQELFEK PLCCGPSSLR 600
  601 KANITDAHES ESSRPLLSSD VEYK