YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGB_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.81
Transmembrane Helix	50	69	0.60
Non-Cytoplasmic	70	128	0.64
Transmembrane Helix	129	148	0.39
Cytoplasmic	149	158	0.52
Transmembrane Helix	159	178	0.38
Non-Cytoplasmic	179	210	0.64
Transmembrane Helix	211	232	0.81
Cytoplasmic	233	244	0.87
Transmembrane Helix	245	269	0.85
Non-Cytoplasmic	270	298	0.92
Transmembrane Helix	299	318	0.92
Cytoplasmic	319	326	0.74
Transmembrane Helix	327	345	0.92
Non-Cytoplasmic	346	350	0.83
Transmembrane Helix	351	369	0.94
Cytoplasmic	370	376	0.75
Transmembrane Helix	377	395	0.65
Non-Cytoplasmic	396	542	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQAADYNP ASRNLHGSSG EMKLRRRKSR QYVSAQEKRS PRRGLLGENT YLVLFTIALR  60
   61 ILNCFLVQTS FVPDEYWQSL EVAHRMVFSY GYLTWEWTER LRGYTYPLIF ASIYKVLHLL 120
  121 GKDSVQFLIW IPRLGQALLS AVADIRLYSL LKQLENQEVA QWVFLCQLCS WFTWYCCTRT 180
  181 LTNTMETSLT ALALFYYPLE GSRSVNSVKY SLLVALACVV RPTALIPWVP LLFRHFYQEQ 240
  241 RKLHLTLHHF LPVGFITFSL SLIIDRIFFG QWTLVQLNFL KFNVLQNLGT FYGSHPWHWY 300
  301 LSQGFPVVLG THLPFFIHGC FLAPRRLHIL LLTVLWTLLV YSMLGHKEFR FIYPVLPFCM 360
  361 VFCGYSLAHL KTWRKAALSF LLLSNVPLAF YTGLVHQRGT LDVMNHIQKV CPRGPDPASA 420
  421 SVFIMMPCHS TPYYSHVHCP LSMRFLQCPP DLTGKTQYLD EADMFYLNPL RWLQQEFHSN 480
  481 ASLPTHLVTF NVLEKEINTF LTSGNYERAA TFFHTHWPER RTGSHIHVYE RRLPGRVNTG 540
  541 GN