YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74215924
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPPCAGSRGR SSCRLLLLLV SVACFVGRSL RHTSSKPLLS FPEALQGGLR FPSFQPILFS  60
   61 PVKMVDREQL VQKARLAEQA ERYDDMAAAM KNVTELNEPL SNEERNLLSV AYKNVVGARR 120
  121 SSWRVISSIE QKTSADGNEK KIEMVRAYRE KIEKELEAVC QDVLSLLDNY LIKNCSETQY 180
  181 ESKVFYLKMK GDYYRYLAEV ATGEKRATVV ESSEKAYSEA HEISKEHMQP THPIRLGLAL 240
  241 NYSVFYYEIQ NAPEQACHLA KTAFDDAIAE LDTLNEDSYK DSTLIMQLLR DNLTLWTSDQ 300
  301 QDDDGGEGNN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.77
Transmembrane Helix	12	30	0.75
Non-Cytoplasmic	31	310	0.98