YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73541088, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLARAAGPR ARHAARPANQ NHSCMKFLFD LFPVILFFAA FKLAGIYTAT AVAIGATLVQ  60
   61 IGWVWLRHRK VEPMQWVSLL IIGVFGGATL VLHNETFIKW KPTVLYWMFT AALMGSVLGW 120
  121 RKNLIRAMME KQVTLPDAVW ARLNLAWASF FAVMGLLNLY VAYQFSTDAW VNFKLFGSMG 180
  181 LMLVFIIVQS VWLSRHMQEN AQD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	40	0.90
Non-Cytoplasmic	41	45	0.73
Transmembrane Helix	46	66	0.94
Cytoplasmic	67	75	0.84
Transmembrane Helix	76	93	0.97
Non-Cytoplasmic	94	102	0.78
Transmembrane Helix	103	124	0.89
Cytoplasmic	125	142	0.90
Transmembrane Helix	143	163	0.93
Non-Cytoplasmic	164	172	0.79
Transmembrane Helix	173	193	0.92
Cytoplasmic	194	203	0.94