YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72118086, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGCRRRGPP GRGGLCRRPR EDPTRTMELT TTIFYVFALV LVLSALKVIT AKNPVHSALF  60
   61 LVLSFFTAAA IWLLLKAEFL AILLVLVYVG AVMVLFLFVV MMIDIDIEHL RRDFWTYVPL 120
  121 ASVVGALIIA EMAIVLVRNF IGTTAPVLPA GSQDPGYSNT AALGKLIYND YIYAFEVAGI 180
  181 ILLVAIIAAV ALTLRRRKDV KGQDIPSQLR TRRDDRVRLV AMPAESQTAQ ADAAATANKN 240
  241

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.79
Transmembrane Helix	31	50	0.83
Cytoplasmic	51	56	0.72
Transmembrane Helix	57	75	0.92
Non-Cytoplasmic	76	80	0.76
Transmembrane Helix	81	103	0.92
Cytoplasmic	104	113	0.87
Transmembrane Helix	114	137	0.89
Non-Cytoplasmic	138	171	0.92
Transmembrane Helix	172	194	0.92
Cytoplasmic	195	240	0.98