YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148682928, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVSALLAS CPTAGLAGGL GVTACAAAGV VLYRIARRVK PTHTMVNCWF CNHDTLVPYG  60
   61 NRNCWDCPHC EQYNGFQENG DYNKPIPAQY MEHLNHVVSS VPSPRDPAQP QQWVSSQVLL 120
  121 CRRCSHHQTT KIKQLAAFTP REEGRYDEEI EVYRHHLEQM YKLCRPCQAA VEYYIKHQNR 180
  181 QLRALLLSHQ FRRREADQAH GQSFSSSAVK APFQVILLRA LAFLACAFLL FTTLYGPSEP 240
  241 FTPGAALPPA LPPGGNSSAA SDNTTSQAEG WQQLLGLLPE HATEKLHEAW AFGQSHQTSI 300
  301 VAVGLLTCLL AMLLAGRIRL RRIDAFSTCL WALLLGLHLA EHYLQAASPG WLDTLKFSTT 360
  361 SLCCLVGFTA AVATRKSTGP RRFRPRRSEK QQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.87
Transmembrane Helix	13	35	0.88
Cytoplasmic	36	214	0.98
Transmembrane Helix	215	235	0.94
Non-Cytoplasmic	236	295	0.97
Transmembrane Helix	296	316	0.91
Cytoplasmic	317	324	0.78
Transmembrane Helix	325	344	0.90
Non-Cytoplasmic	345	354	0.81
Transmembrane Helix	355	374	0.93
Cytoplasmic	375	392	0.90