YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88658620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDIFINLLK LISLPVVFFS ITSTISGLAN LTEIKTLIRK TIFYTISTTV IAATVGLITY  60
   61 LLIDPSKKEL IYNILSTNKH ISNTPDYLSY LMSILPYNFI KVFLDNNVIG CVILAFLIGG 120
  121 ALLLLPDKNK RELLHKVFDA LFDTFLEIAK LILKLMPIAL WSFITVLLYN MKEGYNISNV 180
  181 LKYLLCIMIA NFIQACIILP LLLKLKKIPV IKTFRGVLPA LTIAFFSKSS TATLPTTLRC 240
  241 TQDYLNIPKK ISSFILPVCT TINMNACAAF ILITVFFVSE VNGYTFSIGE MFLWVFLATG 300
  301 AAIGNAGVPM GCYFMAMSYL MSMKVPLSIM GVILPVYTII DMFETAINVW SDVCITQIVH 360
  361 KEYDALIKKG KKIGINDQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.75
Transmembrane Helix	11	31	0.90
Cytoplasmic	32	40	0.84
Transmembrane Helix	41	63	0.93
Non-Cytoplasmic	64	102	0.91
Transmembrane Helix	103	125	0.90
Cytoplasmic	126	150	0.86
Transmembrane Helix	151	169	0.91
Non-Cytoplasmic	170	180	0.81
Transmembrane Helix	181	203	0.92
Cytoplasmic	204	253	0.89
Transmembrane Helix	254	278	0.86
Non-Cytoplasmic	279	291	0.80
Transmembrane Helix	292	314	0.89
Cytoplasmic	315	324	0.63
Transmembrane Helix	325	343	0.66
Non-Cytoplasmic	344	378	0.64