YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600065, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRYDKKFMS LALRIARRGL GNVFPNPAVG CIVVNHGMVV GRGYTQVGGR PHAEVIALNN  60
   61 AGHLAKGSTV YVTLEPCSHY GQTGPCALKL IDAGVKRMVI AAKDPDVRVS GNGIELLRNA 120
  121 GIDVKCGVMY EEARELNIGF FYSKIKNRPF ITVKLASTLD GKIALKDGNS RWITNELTRN 180
  181 WVHKQRSMYD AIMVGSNTIV QDNPMLNTRL PGLECYSPVR IVIDRFGKVC DYHNIIKTSD 240
  241 VIPTYILTND VPQTKLGKAS CLVVDDKDNF LRSAMKMLSV KIGITRLFVE GGGVLITELL 300
  301 KNQLIDRIIW CRSNKIFGND AIPSIGDLDI LTLQCGYNFR AVDTLYFKDD IVEILEHCTE 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	19	0.50
Transmembrane Helix	20	39	0.50
Non-Cytoplasmic	40	360	0.99