YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600064, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.88
Transmembrane Helix	21	44	0.85
Cytoplasmic	45	77	0.88
Transmembrane Helix	78	99	0.92
Non-Cytoplasmic	100	105	0.75
Transmembrane Helix	106	128	0.86
Cytoplasmic	129	162	0.93
Transmembrane Helix	163	182	0.95
Non-Cytoplasmic	183	200	0.86
Transmembrane Helix	201	220	0.93
Cytoplasmic	221	228	0.74
Transmembrane Helix	229	249	0.88
Non-Cytoplasmic	250	258	0.79
Transmembrane Helix	259	281	0.83
Cytoplasmic	282	318	0.92
Transmembrane Helix	319	342	0.85
Non-Cytoplasmic	343	363	0.87
Transmembrane Helix	364	385	0.92
Cytoplasmic	386	399	0.74
Transmembrane Helix	400	417	0.93
Non-Cytoplasmic	418	428	0.71
Transmembrane Helix	429	449	0.92
Cytoplasmic	450	460	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILEFADFF PHISGVLESI FSLTIFRIPL IILWVICLGT FCTLKFKFIN IRLFKHALYV  60
   61 LIKPYNKKNS NTISNIQAFT TAISGTIGLG TISGVIIAIS TGGPGAVLWM IIIGILGMSV 120
  121 KFAEVTLGFK YYLLEKKKNI GGPFQYIKCG LAELGLVKTG KIIAYIYAVI MIIAMSFGGI 180
  181 SFQSNQATVL LSNTFHKINS STIVITLTLL SGLVIMGGIT RIANIMTKLS PIMVILYIVV 240
  241 CTAVIISHSD QLLSTLSTML HGIIEGNSVT GGAIGSFVAG VRRSVFANEA GIGTSPIIHA 300
  301 STNDTEPARV GCIAMLEPFI DTVLVSFITG IVVILTGSYS TINSSNHVII INNIFSNICP 360
  361 ICEYIILPFI IFSFAFSSII TYSYYCEISW KHIFGNSCHV VLCRTLIMCI ILISGLSKNI 420
  421 VPISQLGDLL FIFLTIPNGL TIILLSGTIN QELKKYLCKN