YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600027, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIRSLSSIL ICAVVSLSLY FGGIAFYILC FFLAMVSSVE LFNIMQCRRL YYIPAFFMIV  60
   61 IPYASLVYIY NLLHGEIILI WLIFVIWGTD VAAYFVGKNI GEKKIVPMIS PNKTWAGLFG 120
  121 GIVAGAFISV VISVIFGIFF VFHAFIAGIL IAFVAQVGDI TESYVKRLCK VKDSGSFIPG 180
  181 HGGILDRMDS FIFTAPLVAY YVQKFSKFFL A

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.86
Transmembrane Helix	9	36	0.78
Cytoplasmic	37	49	0.79
Transmembrane Helix	50	70	0.93
Non-Cytoplasmic	71	76	0.83
Transmembrane Helix	77	97	0.95
Cytoplasmic	98	114	0.89
Transmembrane Helix	115	136	0.91
Non-Cytoplasmic	137	139	0.54
Transmembrane Helix	140	160	0.76
Cytoplasmic	161	211	0.72