YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599917, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKCCNCFIL FRTYILYTFM IIDPVAFRLG LLEIKWYSLS YVLGIVFAYW YIRKIDKYRV  60
   61 FSKESYESIM SWWVISIILG GRIGYILFYN LDFYIHFPIE MFKLWNGGMS FHGGLIGIIS 120
  121 GMYIFCRKNK ISILSALDLG ACAVPVGIFF GRIANFINGE LYGKVTDIKF GMVFPNSGDS 180
  181 FYRHPSQLYE AFFEGFLLFV IMNSLFFFTN VRASQGMLSA VYCIWYGVVR FFIEFIREPD 240
  241 AQVGYILFNQ LTMGQLLSVF MVIMGFYFIK LAKMKAKLSM

Type	Start	End	Confidence
Cytoplasmic	1	7	0.95
Transmembrane Helix	8	27	0.92
Non-Cytoplasmic	28	33	0.78
Transmembrane Helix	34	52	0.93
Cytoplasmic	53	68	0.94
Transmembrane Helix	69	89	0.93
Non-Cytoplasmic	90	107	0.83
Transmembrane Helix	108	126	0.95
Cytoplasmic	127	133	0.86
Transmembrane Helix	134	154	0.92
Non-Cytoplasmic	155	190	0.91
Transmembrane Helix	191	209	0.94
Cytoplasmic	210	217	0.73
Transmembrane Helix	218	236	0.90
Non-Cytoplasmic	237	250	0.82
Transmembrane Helix	251	271	0.91
Cytoplasmic	272	280	0.95