YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88658445, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTIILLSI TLLIGNYHKV KLTFEDKFNI ITSLNIIYPF IICYSFYTQH LNIIFILITF  60
   61 IILILILIAA YIDKEFILLK LIMFSSVGIL SLIVICIVLC LTYESALFFS KISLIDFLFG 120
  121 TNWQPSPDIL DGKPVGSFGI LPLLSGTLLI VIVAITIAVP LGLLSAIYIS EYASKKIRYI 180
  181 ANTTLEILAG IPTVVYGYFA VVFLSPSIRS VAKYYNLNAQ SENALVAGLV IGIMILPFIT 240
  241 SLIENAIHSV PKILRYGSMA LGASRADTIW NIIIPYALPN IISSIILSIS RVIGETMIVL 300
  301 MAAGITAHLS FNPLHAVTTI TVQIATILTG DQNFNSIQTS SAYALGLTLF IITWLLNLLA 360
  361 LHITKKATKS IKIH

Type	Start	End	Confidence
Cytoplasmic	1	27	0.80
Transmembrane Helix	28	48	0.76
Non-Cytoplasmic	49	52	0.73
Transmembrane Helix	53	72	0.95
Cytoplasmic	73	80	0.83
Transmembrane Helix	81	103	0.89
Non-Cytoplasmic	104	143	0.84
Transmembrane Helix	144	169	0.86
Cytoplasmic	170	179	0.88
Transmembrane Helix	180	202	0.82
Non-Cytoplasmic	203	223	0.82
Transmembrane Helix	224	247	0.87
Cytoplasmic	248	280	0.67
Transmembrane Helix	281	311	0.58
Non-Cytoplasmic	312	341	0.75
Transmembrane Helix	342	363	0.91
Cytoplasmic	364	374	0.93